In the Millennium era¸ Ebirah makes an appearance in Godzilla: Final Wars as one of the many controlled monsters of the Xilians¸ a race of extraterrestrial beings from Planet X. It destroys a factory near Tokyo. The military forces try to destroy Ebirah¸ but the immense crustacean is too powerful. But the mutant soldiers are called to stop the kaiju. The mutants successfully defeat Ebirah and were about to kill it¸ when it disappeared.